Comments (5)
Version that can handle covariates is now available. Includes a few more new features as well.
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Dear,
I installed and compiled the bayesRv2 but when I try to use the flag -covar with a .txt file containing covariates in the column with space delimiter, I receive this message error: "Unknown command line option :-covar".
Furthermore, I found no information about this flag in the tutorials "fast(er)BayesR.pdf" and "BayesRmanual-0.75.pdf". Luke, which manual are you talking about?
Thank you.
from bayesr.
There is no option to fit covariates. You could try to pre-adjust the phenotypes and use the residuals of the model as input for BayesR.
from bayesr.
from bayesr.
@syntheke @lukelloydjones it appears that Fortran source files on GitHub are not the latest version (there is no string covar in any of the files). Can you update the v2 that can fit covariates? Thanks!
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Related Issues (20)
- Format/Readme file issue HOT 1
- Missing phenotypic values in .fam file
- How do I run BayesR with large memory ? HOT 1
- How to adjust the proportion of SNPs with no additive effect ? HOT 3
- Shape parameter must be positive HOT 1
- Way to do a weighted phenotype analysis with BayesR?
- End-of-file during read error, discrepancy between PLINK .bim file and simulated .bim file? HOT 13
- direction of effect estimates HOT 3
- Using -dfvara -3.0 HOT 1
- Printing additional information for all SNPs with -snpout argument HOT 3
- At line 1736 of file baymods.f90; Fortran runtime error: End of file
- How include random effects in the model HOT 5
- BayesR: Some questions about computation time of bayesR. HOT 7
- fam file HOT 2
- allele frequency HOT 3
- Is there a site restriction HOT 1
- Issue to compile bayesR HOT 5
- Problem with user specification of negative values for the degrees of freedom Va (-dfvara) HOT 1
- bayesR performance problem HOT 9
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