Comments (13)
Yes the sheet was named M1. I finally found the error, ISTDs were not assigned as such in the ISOcorrectlist (forgot the "d" before the compound name). Works great now. Thanks!
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I've tested the analysis of the 3 methods and it works with the SLA, that's so great!
Just one issue, the output_merge.xlsx file does not contain the results of the method 03. I've taken a look at your code and indeed it seems that the method 03 was not implemented in the "merge m1 m2 m3 dataframes" section.
Would it be please possible to get a new version of the SLA with the m3 merging?
Thank you so much :)
Best,
Fabien
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Also, the isotope correction for method 03 doesn't work. Indeed the SLA doesn't read the sheat 'M3' as you can see below:
"
read iso correction dict
if variable_iso.get() == 'Yes':
iso_dict = {'1': pd.read_excel(iso_dict_loc.get('1.0', 'end-1c'),
sheet_name='M1', header=0, index_col=None, na_values='.'),
'2': pd.read_excel(iso_dict_loc.get('1.0', 'end-1c'),
sheet_name='M2', header=0, index_col=None, na_values='.')}
##reading mzml loop start
"
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Hi Gino,
Thank you for all the explanation.
I've generated the method 3 files as "method 3" so according to your code I guess I cannot apply them as method 01 as I cannot modify file names within mzml data files.
So I'm really looking forward to this source code update.
Thanks a lot.
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I can see in SRC that the file was updated, thank you, but I don't know how to use it - I never used Python before: isn't necessary to generate a new version of the SLA?
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I did as you said and it works, but without isotope correction. It seems then that there is an issue in my ISOcorrectlist_V3_3.0 file and the software stops at line 137 in isoadjv2.
I've built the sheet as the others and according to your SOP so I don't know where is the problem.
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Related Issues (2)
- mzml read issue HOT 2
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