Related Issues (20)
- Visualize correlations in retention between IESs in same contig
- Identify potential rearrangements
- Report "breakage score" for MILTEL
- Distinguish subread vs ZMW coverage with MILRAA subread mode HOT 1
- Option to run MILTEL only on part of alignment
- Report paths of external programs used to log
- Bin reads by mapping to transcriptome
- Milraa failed in subread mode HOT 1
- Mask selected regions in MILRAA
- MILCOR and MILTEL for subreads
- MILRAA reports wrong retention score for fuzzy length matches
- Change `ta_pointer_start` and `ta_pointer_end` reporting
- Refactor feature tables to use python numbering internally exclusively
- Document change in TA-boundary coordinate reporting in v0.1.9
- Document attributes fields in comment header of GFF3 output
- Milraa string index out of range HOT 6
- Multi-segment CDS entries not handled by Insert module HOT 1
- Retention scores systematically underestimated
- MILRET muscle version number regexp returning error HOT 1
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