swandro Goto Github PK
Name: Stephen Wandro
Type: User
Bio: Computational Biologist at Micronoma
Stephen Wandro's Projects
comparative-phageomics
Comparing the genomes of a family of phages
format_plate_reader
Python scripts for formatting time course readings on the SpectraMax or Biotek plate readers into a usable format.
little_helpers
Short helper scripts to make life easier. Most apply to microbiome sequencing data, biom tables, etc.
phage_cocktails
Analysis and figures for Phage cocktail paper
phage_simulation
preterm_infant_analysis
Scripts used to analyze preterm infant fecal microbiome and metabolome. DOI: 10.1128/mSphere.00104-18
q2-shogun
A QIIME 2 plugin wrapper for the SHOGUN shallow shotgun sequencing taxonomy profiler
seq_tail_analysis
shotgun_trimming
taxonomy_solution
R shiny app for converting metaphlan2 outputs into simple taxonomy barplots.
variant_filter
Filter bad snp calls out of genome alignments
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