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bactmap

WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

benchmark-neighbour

bioconda-recipes

Conda recipes for the bioconda channel.

cnnc

covolutional neural network based coexpression analysis

deep-learning-illustrated

Deep Learning Illustrated (2020)

deepcontree

deepselex

Inference of DNA-binding preferences from HT-SELEX data using deep neural networks

differentialabundance

nf-core pipeline for gene expression data analysis

dismay

Calculation of distance metrics for matrices

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nf_homoplasty

Nextflow pipeline to get homoplasty on homfam dataset

nf_slavestrees

pcor.bshrink

propr

An R package to calculate proportionality between vectors of compositional data

r-propr-feedstock

A conda-smithy repository for r-propr.

scdesign2

An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated

sct-moa

Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"

similarityregression

Predicting TF sequence-specificity similarity with weighted alignments

stimulus

Stochastic Testing and Input Manipulation for Unbiased Learning Systems

tcoffee

A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence