Transformation map not working about simpleelastix HOT 5 CLOSED

The output you see is just transformix telling you what is doing while it is running (useful for debugging).
You can turn off logging to console using transformix.logToConsoleOff(). Just to be sure, transformix successfully warped your image right?

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@kaspermarstal No unfortunately transformix doesn't warp the image. See the output above:

The command-line option "-def" is not used, so no points are transformed

I am attaching the 2 test images that I am trying to register for your convenience.

Thanks!

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Thanks for the images. The -def message you refer to is related the warping of point sets, not images. For example, if you had specified transfomix.setInputPointSetFilename("points.pts") transformix would tell that the -def argument was detected and points would be warped. In this case the relevant lines here are

Resampling image and writing to disk ...
Resampling took 4.97s

Perhaps you can make a mean image of fixed and moving images and a mean image of fixed and result images to confirm that a transformation takes place?

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I should add a section to the documentation on how to interpret the log, I'd give you that 😊

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@kaspermarstal Thanks for clarifying. After testing the output of the transformix I saw that it has indeed applied the warping. It looked as if it hadn't applied it because it was so close to each other :)

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