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Comments (6)

sunduanchen avatar sunduanchen commented on September 17, 2024

Can your share your data with me?

I wonder it may caused by the big size of your data.

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mitraclip avatar mitraclip commented on September 17, 2024

Thank you for your kind cooperation. Could you give me your common email address?

Best
Yuxing Chen

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sunduanchen avatar sunduanchen commented on September 17, 2024

My email address is [email protected]

Best,
Duanchen

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shawnchizari avatar shawnchizari commented on September 17, 2024

Hi Duanchen,

I am running into the same issue where R studio crashes at the same stage. I do not have an output aside from the save file that is generated on line 125 of Scissor.R. I am working with small single cell and bulk datasets, and I even tried downsampling my Seurat object to 500 cells, but I still encounter this crash.

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mitraclip avatar mitraclip commented on September 17, 2024

Hi Duanchen,

I am running into the same issue where R studio crashes at the same stage. I do not have an output aside from the save file that is generated on line 125 of Scissor.R. I am working with small single cell and bulk datasets, and I even tried downsampling my Seurat object to 500 cells, but I still encounter this crash.

Yes, I also downsampled my data and the size of my data is smaller than the data in tutorial.

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sunduanchen avatar sunduanchen commented on September 17, 2024

Hi Yuxing and Shawn,

I made an update to debug this. Please let me know if it works on your data.

Best,
Duanchen

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