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Sujai Kumar's Projects

assemblage icon assemblage

Tools for working with second gen assemblies, fasta sequences, etc

badger icon badger

A lightweight genome environment

blobtools icon blobtools

Application for the visualisation of draft genome assemblies and general QC

kat icon kat

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

orthofinder icon orthofinder

Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"

shell-novice icon shell-novice

Software Carpentry introduction to the shell for novices.

tardigrade icon tardigrade

Scripts and relevant processed data files for Boothby et al 2015 and Koutsovoulos et al 2015 tardigrade genome papers

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