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Suffi Azizan's Projects

cs50-playground icon cs50-playground

Personal playground repo of my progress while following HarvardX CS50 course.

encode-atac-pipeline-custom icon encode-atac-pipeline-custom

Custom scripts for pre-processing and post-processing data files for ENCODE ATAC-seq pipeline. This repo is tied to an undisclosed research project so many scripts are not usable outside of the project-specific and architectural context they are written for.

fps-var-integration icon fps-var-integration

Notebooks documenting the analyses done to integrate TF footprinting data from TOBIAS and variant data called from the ATAC-seq and DNAse-seq peaks.

malaria-churros icon malaria-churros

Notebooks documenting the use of the pipeline Churros by Wang & Nakato (https://doi.org/10.1093/dnares/dsad026) on P. falciparum ChIP-seq dataset.

qsmooth-norm-workflow icon qsmooth-norm-workflow

Repository detailing Rscript used to run a normalization strategy on a computing cluster via containerization.

tobias-footprinting-custom icon tobias-footprinting-custom

Mirrored repository to record my work on using TOBIAS to process and analyze data from an unpublished research project at work.

variant-calling-analysis icon variant-calling-analysis

Repository to mirror work repo where I store scripts and notebooks pertaining to variant calling pipeline (Samtools mpileup) output data integration with footprinting data.

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