aibs_cell_types

example using AIBS cell types data

allensdk

basics

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

conductance_parameter

covarr-de

Covariate model selection, differential and network expression.

dplyr

Plyr specialised for data frames: faster & with remote datastores

ephys_examples

Notebooks for illustrating analysis of intrinsic ephys data

human_ephys_variability

initial foray into studying patient to patient ephys variability

human_marker_genes

testing marker genes using hodge et al 2019 human nucseq data

ipfx

kcni-school-envs

A collection of docker environments for the KCNI Summer School

kcni_summer

work for day 2 functional genomics

lakatos

Mapping science.

markergeneprofile

Marker gene profile estimation method used in NeuroExpresso manuscript

masterofcelltypes

Braaiiiins!

mitral_cell_diversity

Matlab code used to perform analyses and figures for exploration of role of mitral cell biophysical diversity

mousehumantranscomp

comparison of mouse and human cortical cell type specifi expression

neuroelectro_genes_analysis

neuroelectro_matlab_analysis

Analysis scripts for analyzing data from NeuroElectro project

neuroelectro_methods_paper

neuroelectro_python_analysis

download neuroelectro.org data and perform basic analyses in python

neuroexpressoanalysis

Pre-print at: http://www.biorxiv.org/content/early/2017/05/18/089219

neuroner

named entity recognizer for neuronal cells, based on UIMA Ruta rules

nwb

Convert Axon Binary Files (ABF) to Neurodata Without Borders (NWB).

nwb_conversion

nwb_hackathons

Repository for collecting materials from nwb hackathons

open-science

A presentation about open science for graduate students.

patch-seq-microglia

pseudobulk_tutorial

a basic set of tutorials to illustrate pseudobulk style DE on brain snRNAseq datasets

scater

Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.