stewart-lab Goto Github PK
Type: Organization
Bio: The Stewart Computational Biology group at the Morgridge Institute for Research
stewart-lab's Projects
blue_whale
Blue whale project related scripts and small datasets
bulk_to_sc_mapping
calculator_rs
calculator_yb
charts
CHARTS: Characterizing Tumor Subpopulations
cmdlogtime
Packaging of wrapper with logging, timing, and parameter histories
detrending
TBD
diseases_lexicon
Diseases Lexicon
drugs_subset_for_drugs_repurposing_application
expert_curated_disease_drug_associations
fast_km
A Containerized KinderMiner / Serial KinderMiner Server
figures-and-supplementary-figures---skim-manuscript
go_gene_post_processor
goseqpy
A Python wrapper around GOSeq
gsvapy
A Python wrapper around the GSVA algorithm
heliobacter
jackcalc
johansson_2023_crtac1_manuscript_rmd
Statistical analysis of CRTAC1 concentrations in various patient groups
kinderminer_2
kinderminer_kg
Build a knowledge graph from PubMed abstracts using KinderMiner, Prodigy, and spaCy
kinderminer_webapp
Code for the KinderMiner web application
lifang_scrnaseq
single cell RNA seq scripts for Li Fang Jack's fluidigm data
nile-rat-genome-curation-and-improvement
phenotypes_and_symptoms_lexicon
pr_demo
rms_pkgs
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
roc_and_pr
scrnaseq_downstream
Code for the analysis of the pig retinal organoid data from David Gamm
scrnaseq_library
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