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shikhanayar avatar shikhanayar commented on June 9, 2024 1

Sorry, when I run the above function using the results dataframe, the only plots generated are boxplot and credible_intervals_1D. In your vignette, I also see the credible_intervals_2D plot but I'm not seeing that here.

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stemangiola avatar stemangiola commented on June 9, 2024

Hello @shikhanayar,

can you send me a minimal object, anonymised if needed, so I can test it?

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shikhanayar avatar shikhanayar commented on June 9, 2024

Thanks for your reply @stemangiola . I was able to resolve the above issue (I think that there was an issue in my samples column).

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stemangiola avatar stemangiola commented on June 9, 2024

Thanks for your reply @stemangiola . I was able to resolve the above issue (I think that there was an issue in my samples column).

Great, however, knowing your specific case would help me create a warning that would leave users less confused if this happens.

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shikhanayar avatar shikhanayar commented on June 9, 2024

For sure, I believe that some of the sample rows were duplicated, so when creating a dataframe of cell type and samples, there weren't complete distinct values. Follow-up question -- are there scenarios you have seen where 2D plots were not computed by plots<- plot_summary(results)?

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stemangiola avatar stemangiola commented on June 9, 2024

are there scenarios you have seen where 2D plots were not computed by plots<- plot_summary(results)?

Can you be more elaborate more?

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stemangiola avatar stemangiola commented on June 9, 2024

I am refactoring the plots in a new release. 1d vs 2d depends on how you model the variability.

I will keep you posted.

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stemangiola avatar stemangiola commented on June 9, 2024

Can you please reinstall from github and let me know?

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