statbiophys Goto Github PK
Name: Statistical Biophysics Consortium
Type: Organization
Name: Statistical Biophysics Consortium
Type: Organization
A python/c++ module to store large amount of sequences and look at hamming distance clustering
Scripts for the evaluation of bnabs probabilities of recombination and evolution, according to models learned on Ig sequences from either healthy or hiv-infected donors.
Tools for information theoretic measures estimation.
On generative models of T cell receptor sequences
Useful tools for your life at ENS
Python package for inference of lineages in antibody repertoires
Data processing and modeling for HIV and BCR longitudinal data
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
ImmPrint answers the question "were these two samples extracted from the same individual ?" by looking at the numbers and sequences of shared unique TCR between the two samples.
Companion github to the "Immune fingerprinting" paper
Probabilistic alignment software to deal with indels in Ig receptor sequences.
Repository associated with the paper "Inferring and predicting the T-cells repertoire dynamics of healthy individuals"
Maximum Entropy model for P(sigma_i, K)
Companion Github of the MINIMALIST preprint.
NoisET is an easy-to-use python package that implements and generalizes a previously developed Bayesian method in [Puelma Touzel et al, 2020] ). It can be used to learn experimental noise models for repertoire sequencing from replicates, and to detect responding clones following a stimulus.
Compute generation probabilities of CDR3 amino acid and nucleotide sequences
A package to generate TCR/BCR sequences fast, based on olga
pygor3 repository
RBM, TRBM and neural metrics
Repository associated with the paper "Modeling and predicting the overlap of B- and T-cell receptor repertoires in healthy and SARS-CoV-2 infected individuals" (https://www.biorxiv.org/content/10.1101/2021.12.17.473105v1.article-metrics)
Repository associated with the paper "Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints" (https://arxiv.org/abs/2107.12124).
Models of somatic hypermutation based on out-of-frame sequences
Python and MATLAB code and data for statistical physics analysis of social behavior in Eco-HAB mice.
Infer selection pressures on features of amino acid CDR3 sequences.
Simple Olga & Sonia (SOS)
Single Time-point Antibody Recognition
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.