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advanced-scientific-programming

This repo contain attempt on learning the applied scientific programming.

albm

Advanced Lake Biogeochemistry Model

amath495_w23_geophysicalfluiddynamics

some code to go with the reading course

baltic-benthic-status

Code and data to assess bottom fishing impact and hypoxia on benthic communities (paper is here: https://doi.org/10.1093/icesjms/fsz219)

bayesian_cbiomes

notebooks and files for the Bayesian CBIOMES workshop

bioirrigation_bgs

Model code for the bioirrigation model used to fit continuous tracer measurements

canyon-b

Matlab and R routines to robustly estimate open ocean CO2 variables and macronutrients from T, S and O2 data using Bayesian neural networks ("CANYON-B") of Bittig et al. (2018) Front. Mar. Sci. 5:328. http://dx.doi.org/10.3389/fmars.2018.00328

carbonate

A project about carbonate rock, carbonate diagenesis, carbon isotope analysis; integrating sedimentology, element cycling, geochemical modelling and stratigraphy.

catam-julia

CATAM material in Julia

climate_system

Notes and practicals for my "Physics of the Climate System" lecture

cmip6_bcp

content

Matlab and R routines to robustly estimate open ocean CO2 variables that are made internally consistent with carbonate chemistry ("CONTENT") of Bittig et al. (2018) Front. Mar. Sci. 5:328. http://dx.doi.org/10.3389/fmars.2018.00328

coralipedia-app

This is a simple app that help to provide a simplified introduction into identification of common coral type for Chagos Archilepelagos Island.

cropping-header-from-document

R script to remove part of document (for removing sensitive document part)

data-assimilation-notebooks

databook_python

IPython notebooks with demo code intended as a companion to the book "Data-Driven Science and Engineering: Machine Learning, Dynamical Systems, and Control" by Steven L. Brunton and J. Nathan Kutz

delaware-water-temp

Data assimilation estimates of Delaware River Basin water temperature for both streams and lakes.

diageneticmodelling

Practical session on Diagenetic Modelling in R given at the Face-It summer school, Calvi July 2017 & Oct 2019.

diva-workshops

Code, data and instructions for the Diva workshops

dlcourse_moi_2022

dtremotesensing

earthss220

Julia jupyter notebooks for UCI's EarthSS 220 Course.

endas

Ensemble Data Assimilation library for C++/C and (eventually) Python

enkf-c

EnKF code for DA with large-scale layered geophysical models.

envireef

Environmental Simulation Course using eReefs

extpom

The (slight) modification of sbPOM (Stony Brook Princeton Ocean Model).

fdse

Documentation and scripts for the computational projects for the Fluid Dynamics of Sustainability and the Environment (FDSE) summer school

fjordeco

Files for Friday Harbor Labs Summer Course on FjordEco

flipper

R-files associated with the 'FLexible Interpretation of Porewater Profiles and Estimation of Rates'

flywheel

Your own Duolingo without overengineering