standage Goto Github PK

2014-09-03-reproducibility

Guest lecture for Bioinformatics Masters student capstone course, covering basics of project management with a focus on reproducibility

2015-01-07_test

Fake SWC workshop website

2015-06-25-byu

2015-petmarsb

Many-sample de novo assembly of the sea lamprey transcriptome

2015-t3davis-day3

2017-03-22-csumb

Website for 2017 CSUMB Data Carpentry genomics workshop

adj_iiloci

aegean

Integrated toolkit for analysis and evaluation of annotated genomes

amel-ce-2014-09

amel-dmnt3-2014-05

My re-analysis of Apis mellifera dmnt3-knockdown RNA-Seq data published with the following paper: http://dx.doi.org/10.1073/pnas.1310735110. Data available at http://www.ncbi.nlm.nih.gov/sra/?term=SRP024289.

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

arioc-troubleshoot

asmbl-comp

A set of scripts for comparing two assemblies.

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

bghandbook

Handbook for Brendel Group students, postdocs, and staff

bioinformatics

Tools for bioinformatics

bioman

manual pages for the bioinformatician

cgs-s16

Computational Genomics Lab Course, Indiana University, 2016

cgs-spring2014

Repository for Computational Genome Sciences class, Indiana University, Biol Z620, Spring 2014

chlorophyta

christmas2014

Family Christmas card for 2014, because photos

christmas2015

cli-tutorial

Tutorial on "Designing command-line interfaces (CLIs) for scientific software" intended for scientists with beginner-level skills in programming and UNIX/Linux.

coleman-exchange

contra

ctypes-demo

cython-packaging-demo

daphnia-iloci

data_hacks

Command line utilities for data analysis

dept

Differential Expression Permutation Testing