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BioLockJ is an automated metagenomics pipeline for WGS/16s sequence analysis. The extensible Java framework writes/executes bash scripts to call external applications via BioModule interface. BioModules perform sequence processing, taxonomy assignment, univariate modelling, and report generation.
Additional modules that run as part of BioLockJ but are not part of the base program
Fodor Lab support files + BioLockJ Test pipelines + Docker helper scripts
scripts for support MAG analysis
Race, the vaginal microbiome, and spontaneous preterm birth in a study of preterm birth risk using a subset of the Pregnancy, Infection, and Nutrition (PIN) Study
Test suite for BioLockJ development team.
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