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benchmark-data-levine-32-dim

R code to prepare 32-dimensional CyTOF benchmark data set from Levine et al. (2015), for testing high-dimensional clustering algorithms

bio_corex

A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overlapping structure, and includes visualizations

boltzmannmachines.jl

A Julia package for training and evaluating multimodal deep Boltzmann machines

contrastive

Contrastive PCA

corex

CorEx or "Correlation Explanation" discovers a hierarchy of informative latent factors. This reference implementation has been superseded by other versions below.

covid19_inference

Bayesian python toolbox for inference and forecast of the spread of the Coronavirus

distill-nn-tree

Distillation of Neural Network Into a Soft Decision Tree

dndt

Deep Neural Decision Trees

erum-2020

Jupyter notebook for the talk at eRUM 2020

exploring-generative-deep-learning-for-omics-data-by-using-log-linear-models

flux.jl

Relax! Flux is the ML library that doesn't make you tensor

foerster-hess-immune-contexture-2018

Test

gcb-2022-ws1

html_css_js

Example code for learning web development

interpretable-generative-deep-learning

introduction-julia-

julia-python

Installing Julia and Python environments

loglinearmodels.jl

Fitting of log linear models via iterative proportional fitting

model-zoo

Please do not feed the models

noto-emoji

Noto Emoji fonts

parsey_mcparseface_export

Code for exporting syntaxnet/parsey_mcparseface as a Tensorflow SavedModelBundle

patternextractor.jl

patternsbyloglin.jl

Extract patterns from categorical data in Julia.

proteomicsscripts

reimer

scikit-survival

Survival analysis built on top of scikit-learn

scvae

Deep learning for single-cell transcript counts

scvi

Deep generative modeling for single-cell transcriptomics

scvi-reproducibility

Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"

sequential-selection

sequential selection procedures