Name: Sriram Srikant
Type: User
Company: Dept. of Biology, MIT
Bio: Post-doctoral scientist in the Laub Lab, Dept of Biology, MIT. Ph.D from Gaudet Lab and Murray Lab, Dept of MCB, Harvard.
Twitter: sriram_srikant
Location: Cambridge, MA
Sriram Srikant's Projects
Code-base for my ABC-selectivity paper in Current Biology
Collection of files and Jupyter lab notebooks written to extract ABC protein domains from proteomes. Performed for FEBS review.
This is the code-base used in the analysis of the T4 experimental evolution to overcome toxIN. Submitted to support manuscript being prepared.
These are iPython notebooks used for analysis in my 2019 ABC-selectivity paper.
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
To help out the Laub labs. Finds growth rates from OD vs. time measurements on a plate reader.
Code-base to identify fungal pheromones from genome sequences. Written for publication being prepared from the Murray Lab
plasmid maps for my dissertation
This is a set of scripts that help in analysing sequences of DNA / Protein and parse them for various uses.
Collaboration with Hannah Foster (Burton Lab)