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sqjin avatar sqjin commented on July 23, 2024

@BeyondMyPast228 First, our customized hierarchical plot allows easy-to-identified paracrine vs. autocrine signaling links; second, the signaling role plot also can tell you based on the sender and receiver measures; third, you can also access the communication probability matrix via cellchat@netP$prob or cellchat@net$prob, where the non-zero elements in the diagonal indicate the autocrine signaling.

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BeyondMyPast228 avatar BeyondMyPast228 commented on July 23, 2024

Thanks your answer.

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guokai8 avatar guokai8 commented on July 23, 2024

Hi @sqjin, so in the hierarchical plot, the left part is autocrine or the right part is autocrine?

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sqjin avatar sqjin commented on July 23, 2024

@guokai8 I am not very clear what you are referring to. But the link from one solid circle (source) with one open circle (target) with the same colors is the autocrine signaling.

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