Comments (1)
@callaL I am sorry I have no idea on this error. Make sure you are using the normalized data without negative values as input. I suggest you to run each line of the codes in computeCommunProb.
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Related Issues (20)
- Using Seurat object with genes regressed HOT 1
- Why do I always get two plots in the netVisual function (and cannot save either of them as a pdf or svg or png file as well) ? HOT 2
- Comparison of 2 datasets issue HOT 3
- Another question about the netVisual_bubble function
- Permutation test
- Biological replicates in Seurat HOT 4
- Differences in results when comparing two datasets HOT 4
- color change for cell types in Cellchat how to add color palletteas function in here directly
- data.signaling matrix error when using mouse database (Error in identifyOverExpressedGenes) HOT 4
- Error in computeCommunProb(cellchat, type = "truncatedMean", trim = 0.1, : The suggested minimum value of scaled distances is in [1,2], and the calculated value here is 0
- HOW TO RETRIEVE OR READ L-R FROM CHORD DIAGRAM HOT 1
- Difference in number of interaction when done in other way
- Interpreting communication probability values HOT 2
- function netAnalysis_signalingRole_scatter, difference between signaling = NULL and signaling = all pathways as input? HOT 1
- unable to start device 'png' in save the plots of the all inferred network HOT 2
- missing x-label for netVisual_bubble
- How the pathway information of receptor ligand pairs is obtained? HOT 1
- Definition of interaction strength HOT 1
- netVisual_heatmap: no good for comparison
- Clarification on CellChat Analysis Results - Definition of "sample specific" and "Incoming & Outcoming specific" HOT 2
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