Comments (1)
Hi @LooLipin, CellChat provides two functions to connect cell groups with signaling pathways, including netAnalysis_river
and netAnalysis_dot
. We demonstrate this in the tutorial. You can also check the method details of our preprint to see how we achieve such aim.
from cellchat.
Related Issues (20)
- Error netVisual_heatmap() on a merged object from Seurat
- netAnalysis_signalingRole_network cluster.cols and cluster.rows not working HOT 1
- error with identifyOverExpressedGenes(cellchat) HOT 1
- Error in if (dim(prob)[3] <= 25) { : argument is of length zero HOT 2
- NetP empty after running computeCommunProb HOT 1
- Missing Column `annotation` in LRsig after merge cellchat and celltalk L-R pair
- parameter "group.by" in subsetCellChat doesn't work
- Issue with installing CellChat package in R studio HOT 1
- Why haven't we utilized single-cell proteomics for cell communication recognition and prediction? HOT 1
- Error in createCellChat object
- [email protected] 0 x 12257 sparse Matrix of class "dgCMatrix" HOT 2
- rankingsimilarity - back to issue #160 HOT 1
- unused arguments (min.dist = 0.3, n.neighbors = k) HOT 1
- Using a two-species sample HOT 1
- Error in base::colSums(x, na.rm = na.rm, dims = dims, ...) : 'x' must be an array of at least two dimensions HOT 5
- could not find function "findEnrichedSignaling" HOT 1
- mergeCellChat
- explanation of the df from subsetCommunication HOT 4
- error in netVisual_bubble plotting HOT 4
- Incorrect documentation / use of thresh.pc argument HOT 2
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from cellchat.