Comments (1)
Hi @odannis,
I think there's currently a quirk in the logic how the --seq0-file
option is parsed. I have a hunch that if you change:
if opt.seq0_mrf:
-> if opt.seq0_mrf and not opt.seq0_file:
here: https://github.com/soedinglab/CCMgen/blob/master/ccmpred/scripts/run_ccmgen.py#L191
it might work - I cannot promise that I can test and fix this in the near future though.
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