Name: Saba Nafees
Type: User
Bio: Mathematical & computational biologist doing computational biology and developing methods & tools to understand sequence-phenotype interactions.
Twitter: saba_nafees314
Location: San Francisco, CA
Blog: https://snafees.github.io/
Saba Nafees's Projects
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
Python Tool for Scraping Bay Area County Websites for Covid-19 Data
ideas, thoughts, etc.
k-mer similarity analysis pipeline.
Repository to host tool-specific module files for the Nextflow DSL2 community!
Code and files for the main nf-core website.
Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.
Manuscript for k-mer based comparative transcriptomics
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
My personal website!
Test data to be used for automated testing with the nf-core pipelines
test repo
docs holder for usher wiki