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SHANNON DUNNIGAN KIMMEL

Hi there! I work in the National Estuarine Research Reserve System as the System-Wide Monitoring (SWMP) Program Manager at the Guana Tolomato Matanzas NERR in St. Augustine, FL. This program collects 15-minute continuous water quality and weather data and therefore, I quickly jumped into R programming in order to be able to tackle working with this data (reaching the end of an Excel spreadsheet was a moment for me).

πŸ“« How to reach me: email is best @ [email protected] Check out my resume here.

What am I up to?

  • I am currently analyzing 20-years of monthly chlorophyll-a data from two long-term monitoring programs in the St. Augustine region gtm-chla-20yr using generalized additive models, mixed-meta regression analysis, and decomposition of timeseries for seasonality.

  • I recently published a manuscript analyzing six years of monthly oyster spat monitoring in the Guana Tolomato Matanzas estuary spat using generalized linear models and pairing these patterns with continuous water quality data in similar areas.

  • I am the primary administrator for the GTMNERR organization on GitHub.

  • πŸ”¬ I am integrating Quarto and GitHub with my team in our projects and helping to develop functional workflows for varying experience levels on the teams.

Experience

  • 2016 - present: System-Wide Monitoring Program (SWMP) Manager (Guana Tolomato Matanzas NERR), contracted through University of North Florida.
  • 2020 - 2022: Data Manager for NERRS Science Collaborative Catalyst project "Refining techniques for high-frequency monitoring of chlorophyll in the NERRS". The project code is here chla-nerrs-catalyst and includes my first attempt at a GitHub Pages site built with R Markdown! (πŸ’ƒPersonal achievement!)
  • 2013 - 2021: Adjunct Instructor (University of North Florida)
  • 2015 - 2016: Oyster Condition Assessment Field Technician (Florida Department of Environmental Protection)

Teaching

I strive to make programming less intimidating for beginners and to help people with their R-programming and data science workflows! My favorite things to teach are data visualizations. See some of my teaching experience below:

  • 2022
    • Data Visualization: a workshop I created and led on 2022 January 27-28 as part of a series of R workshops sponsored by the Gulf and Florida National Estuarine Research Reserves (NERRs). Materials at 2022-01_data-viz-workshop
  • 2021
    • R For the Infrequent UseR (virtual): a workshop I taught on 2021 September 23-24 as part of a series of R workshops sponsored by the Gulf and Florida National Estuarine Research Reserves (NERRs). Materials at 2021-infrequent-useR
  • 2020
    • Integrating R into your work with RStudio and the tidyverse (virtual): a workshop I co-taught with Kim Cressman that was split into four days and covered data visualization, wrangling, and basic statistical outputs on 2020 June 18-19 and 25-26 hosted by the Guana Tolomato Matanzas NERR. Materials at 2020-06_IntegrateR
    • Integrating R into your work with RStudio and the tidyverse (in-person): a workshop I co-taught with Kim Cressman in Moss Point, MS that covered data visualization, wrangling, and basic statistical outputs on 2020 February 19-20 hosted by the Grand Bay NERR. Materials at: swmpkim/2020-02_GBNERR_Rworkshop
  • 2019

Education

  • MS (2015): Biology with Coastal Biology Focus (UNF)
  • BS (2012): Biological Science with certificate in Living Marine Resources (FSU)

Shannon Dunnigan Kimmel's Projects

2020-02_gbnerr_rworkshop icon 2020-02_gbnerr_rworkshop

Materials for "Integrating R into your work with RStudio and the tidyverse", Feb. 19-20, 2020 at Grand Bay NERR

2020-06_gtmnerr_rworkshop icon 2020-06_gtmnerr_rworkshop

Webpage materials for workshop "Integrating R into your work with RStudio and the tidyverse" June 18-19, 25-26, hosted by Guana Tolomato Matanzas NERR

2020-06_integrater icon 2020-06_integrater

Materials for "Integrating R into your work with RStudio and the tidyverse" workshop series, Updated for one given June 18-19 & 25-26, 2020, hosted by GTMNERR

2021-gtmswmp icon 2021-gtmswmp

code written in 2021 working with SWMP data collected at the GTMNERR

2021-infrequent-user icon 2021-infrequent-user

Materials for the "R for the Infrequent UseR" Workshop Thursday, September 23 to Friday, September 24, 2021.

2022_infrequentuser_wrangling icon 2022_infrequentuser_wrangling

Materials for the 'data wrangling and tidying' workshop in May 2022. This is the last workshop in the 'R for the infrequent useR' series out of the GTM NERR.

beautiful-jekyll icon beautiful-jekyll

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

chla-gtm-temp-interference icon chla-gtm-temp-interference

data template for temperature interference testing of Total Algae sensor for the National Science Collaborative Catalyst project, "Refining Techniques for High-Frequency Monitoring of Chlorophyll in the NERRS".

chla-nerrs icon chla-nerrs

Files for the Total Algae Chlorophyll Sensor Assessment project for the National Estuarine Research Reserve System

chla-nerrs-catalyst icon chla-nerrs-catalyst

Project files for the NERRS Science Collaborative Project "Refining techniques for high-frequency monitoring of chlorophyll in the NERRS"

gtm-chla-20yr icon gtm-chla-20yr

Two decades of long-term monitoring data to understand variability and trends in chlorophyll a in the Guana Tolomato Matanzas estuary in Northeast Florida.

guana icon guana

Files associated with monthly water quality and nutrient data collected in the Guana system from July 2017-present

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