sjaenick Goto Github PK
Name: Sebastian Jaenicke
Type: User
Location: Dortmund, Germany
Sebastian Jaenicke's Projects
assignbin
bamstats
bamstats: BAM alignment statistics per reference sequence
cant-hyd-hydrocarbonbiodegradation
Hydrocarbon biodegradation gene annotation
classifier
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
fraggenescanplus
Scalable high-throughput short-read open reading frame prediction
gendb_ws
Archive of my diploma thesis project focused on remote tool execution for the GenDB genome annotation system
ghostz
GHOSTZ: A homology search tool which can detect remote homologues like BLAST and is about 200 times more efficient than BLAST by using database subsequence clustering.
klib
A standalone and lightweight C library
kraken
Kraken taxonomic sequence classification system
kraken2
The second version of the Kraken taxonomic sequence classification system
kraken_db_install_scripts
Updated Kraken DB install scripts to cope with new-ish NCBI structure
mash
Fast genome and metagenome distance estimation using MinHash
metabmf
metabolic-hmms
HMM databases for microbial metabolic genes of environmental/biogeochemical importance.
ncbiduck
Playground for NCBI taxonomy data and DuckDB
orforise
Comparison pipeline for Prokaryote Protein Coding Gene Predictors
pprodigal
Python3 wrapper for parallelized gene prediction using Prodigal
prefuse
A toolkit for building interactive information visualization applications.
protobuf
Protocol Buffers - Google's data interchange format
slurmstats
Job array statistics for SLURM-based HPC clusters
spliceai-lookup
Website for checking SpliceAI and Pangolin scores:
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