Name: Sindi Lab (University of California, Merced)
Type: Organization
Bio: The Sindi Lab focuses on mathematical and computational modeling of complex biological processes using applied mathematics methods and machine learning.
Location: California
Blog: https://www.sindilab.com/
Sindi Lab (University of California, Merced)'s Projects
An easy-to-use PyTorch implementation of Automatic Cell-Types Identification of single-cell RNA sequencing using Neural Networks (ACTINN)
The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders
This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomics analysis.
This repository contains a few of the perl scripts used to analyze data in going through phages manuscript
PhD project at UC Merced
The public repository for N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification
A repository to host the main scripts for training (and pre-training) N-ACT
The main repository hosting the implementation of scANNA (single-cell ANalysis using Neural Attention)
A package for pre-processing single-cell data in Python for machine learning purposes
This Repository will host basic Tutorial for getting started with SingleCell Analysis in Python