simularium Goto Github PK
Name: Simularium
Type: Organization
Simularium's Projects
binding-sim-edu
cytosim
from https://gitlab.com/f-nedelec/cytosim
medyan
metrics-calculator
[pre-release] Calculate plot metrics from spatial agent data
nbsv
physicell
PhysiCell: Scientist end users should use latest release! Bugfixes should be submitted to the development branch.
readdy-models
[Pre-Release] Tools for building computational biology models in ReaDDy.
simularium-autoconversion
simularium-data-library
View lists of .simularium files in public AWS S3 buckets and load them in the Simularium viewer.
simularium-engine
C++ back end application that interfaces with biological simulation engines and serves simulation data to the front end website
simularium-lambdas
AWS Lambda functions for Simularium
simularium-planning
simularium-viewer
NPM package to view Simularium trajectories in 3D
simularium-website
Front end website for the Simularium project, includes the Simularium viewer
simulariumio
Python package that converts simulation outputs to the format consumed by the Simularium viewer website
subcell-pipeline
Simulation, analysis, and visualization functionality for subcellular models
subcell-website
Website for subcellular models
trajectory-compare
Prototype web pages for comparing simulation trajectories.
vivarium-models
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