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Hi there 👋

I'm a last year neuroscience PhD candidate working on deep brain stimulation, medical imaging, signal processing, connectomics, and image guided surgery.

Here is where some of my projects come to life.

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Simon Oxenford's Projects

ants icon ants

Advanced Normalization Tools (ANTs)

continuous-stats icon continuous-stats

Plugin for the Open Ephys GUI to compute the exponentially weighted mean or standard deviation of incoming continuous data.

intracranialneurophysdl icon intracranialneurophysdl

A short course for getting started with deep learning for intracranial extracellular neurophysiology.

keymorph icon keymorph

Robust multimodal brain registration via keypoints

leaddbs icon leaddbs

Lead-DBS is a MATLAB-toolbox facilitating deep brain stimulation electrode locations and connectomic imaging.

meet icon meet

Modular EEg Toolkit - MEET

neuroportdbs icon neuroportdbs

Software for performing DBS clinical surgeries using Blackrock Neuroport system

plastimatch icon plastimatch

Plastimatch is an open source software for image computation. All development is currently done on GitLab.

plugin-gui icon plugin-gui

Software for processing, recording, and visualizing multichannel electrophysiology data

slicer icon slicer

Multi-platform, free open source software for visualization and image computing.

slicerants icon slicerants

This extension implements ANTs Registration into Slicer

slicerdmri icon slicerdmri

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

slicerelastix icon slicerelastix

This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.

slicernetstim icon slicernetstim

Collection of 3D Slicer modules mainly focused on deep brain stimulation applications.

slicerneuro icon slicerneuro

Extension for 3D Slicer than installs tools commonly needed for neuroimaging.

slicerrt icon slicerrt

Open-source toolkit for radiation therapy research, an extension of 3D Slicer. Features include DICOM-RT import/export, dose volume histogram, dose accumulation, external beam planning (TPS), structure comparison and morphology, isodose line/surface generation, etc.

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