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simone codeluppi's Projects

3dmatch-toolbox icon 3dmatch-toolbox

3DMatch - a 3D ConvNet-based local geometric descriptor for aligning 3D meshes and point clouds.

adaptive-thresholding icon adaptive-thresholding

Combination of Gamma Gaussian Mixture model and topological FDR for thresholding fMRI statistical maps.

ashlar icon ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

bioformats icon bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

cellprofiler icon cellprofiler

CellProfiler is open-source cellular image analysis software.

cookiecutter-data-science icon cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

dask_condor icon dask_condor

HTCondor cluster manager for Dask.distributed (experimental)

davos icon davos

My attempt at decoding the DNA of the Davos Bitcoin Challenge

dl-workshop icon dl-workshop

A deep learning workshop, done from scratch, taught without any frameworks.

dna icon dna

A python script to encode/decode arbitrary computer files into DNA sequences.

flex icon flex

A minimalist Pelican theme.

flowdec icon flowdec

TensorFlow Deconvolution for Microscopy Data

fonts icon fonts

Patched fonts for Powerline users.

got-your-back icon got-your-back

Got Your Back (GYB) is a command line tool for backing up your Gmail messages to your local computer. It uses the standard IMAP protocol but also takes advantage of some custom Gmail IMAP extensions. For help with GYB, see the Getting Started Guide at https://github.com/jay0lee/got-your-back/wiki

gputools icon gputools

GPU accelerated image/volume processing in Python

handson-ml2 icon handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

imageanalysisnotes icon imageanalysisnotes

Notebooks with image analysis notes. Thanks to everybody that provided inspiration and material

ipython icon ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

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