siminab Goto Github PK

bias-estimating-life-expectancy-morquio

Bias for estimating life expectancy from age at death: A simulation approach applied to Morquio Syndrome A

bioc2020

BioC2020: Where Software and Biology Connect

bioconductor2021

cancermutationanalysis-release

cdgnet

Repository for code related to the CDGnet tool for prioritizing targeted cancer therapies

cdgnet-package

CDGnet package for shiny app

consistency_prot

covid19-review

A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

dmd-mdx-pred-metabolomics

Code for analysis of metabolomics data for DMD mdx mouse model

dmd-metabolomics

Code for analysis of metabolomics data for DMD natural history study

er-breast-cancer-resistance

Data from Shajahan-Haq et 2017 Oncotarget paper

fda-approved-targeted-therapies-label-extraction

Extract FDA approved target therapy and related gene, protein, disease, and medication labels from HTML

fdr-regression

Code for "A direct approach to estimating false discovery rates conditional on covariates" by SM Boca and JT Leek

github-slideshow

A robot powered training repository :robot:

gymnastics-statistics

Various bits of R code, visualization, and analysis relating to artistic gymnastics (just for fun!)

hello-world

Doing this for practice!

heterozygosity-and-admixture

Code for article "On the heterozygosity of an admixed population"

jtleek.github.io

Website

markdown-portfolio

mentoring

Various tips and tools for students

multimed

Package which provides methods for testing multiple mediators simultaneously, also on Bioconductor

mvma

Code, figures, and tables for paper "Multivariate meta-analysis with an increasing number of parameters"

nfpmshinycomponent

This package provides an API for interactive network visualization of gene-drug and gene-gene interactions.

perspective-on-prediction

plot_words_europe_map

popadmix-app

For summer intern

popadmix-pkg

A package to calculate heterozygosity, Fst and make plots about them.

presentations

Talks, posters, workshops

qc-reports

QC reporting infrastructure for the CPTAC3 CDAP