Comments (3)
picca
commented on June 11, 2024
1
I will discuss with the scipy/pooch maintainer in order to find a solution to this problem.
thanks a lot
Fred
----- Le 2 Mai 24, à 10:16, Thomas VINCENT ***@***.*** a écrit :
Hi,
Here are a couple of options I can come up with:
- If `scipy` is not installed, those tests will be skipped (but other tests will
also be skipped). Is it easy to do so in the packaging config?
not that simple since the dependencies are automatically computed from packages installed in the chroot during the build. So I need to install scipy in order to have the correct dependencies.
This computation is done via dh-python3.
I can indeed un-activate the test during the build and run them only via the CI... but I prefer to have an early failure during the build in order to avoid uploading a broken package.
- Otherwise, is it possible to copy the
[ascent.dat](https://raw.githubusercontent.com/scipy/dataset-ascent/main/ascent.dat)
in the packaging repo and then copy it to
`/builds/science-team/silx/debian/output/source_dir/.pybuild/cpython3_3.11_silx/.cache/scipy-data/`?
The `pooch` package used by `scipy` would then find it.
This doesn not seems a resonable solution, but maybe providing a dedicated package with the data files expected by scipy could, would possible.
I do not know the size of these datasets... Debian-science could be the place to discuss about this.
- I don't know what is the usual Debian way, but the `scipy` packaging could
also embed the data files: The cache folder can be changed by patching the
following line in `scipy`:
https://github.com/scipy/scipy/blob/c0fa9e36168c24ce6772e054653c82c73e083d56/scipy/datasets/_fetchers.py#L14
That would be a generic way to fix it.
yes :)
- Finally, we could also embed the `ascent.dat` file in `silx` (it's "public
domain"), but that would be for another release.
I think that it is a bad idea :)). :p
I will put this on my TODO list :).
once again. Thanks a lot.
Fred
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t20100
commented on June 11, 2024
Hi,
Here are a couple of options I can come up with:
-
If
scipyis not installed, those tests will be skipped (but other tests will also be skipped). Is it easy to do so in the packaging config? -
Otherwise, is it possible to copy the ascent.dat in the packaging repo and then copy it to
/builds/science-team/silx/debian/output/source_dir/.pybuild/cpython3_3.11_silx/.cache/scipy-data/? Thepoochpackage used byscipywould then find it. -
I don't know what is the usual Debian way, but the
scipypackaging could also embed the data files: The cache folder can be changed by patching the following line inscipy: https://github.com/scipy/scipy/blob/c0fa9e36168c24ce6772e054653c82c73e083d56/scipy/datasets/_fetchers.py#L14
That would be a generic way to fix it. -
Finally, we could also embed the
ascent.datfile insilx(it's "public domain"), but that would be for another release.
Let me know what you think of those approaches.
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t20100
commented on June 11, 2024
- Finally, we could also embed the
ascent.datfile insilx(it's "public
domain"), but that would be for another release.I think that it is a bad idea :)). :p
Fully agreed! That was my last option ;)
once again. Thanks a lot.
You're welcome, and thanks a lot for all the packaging effort!
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