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amip-final_assignment

Using Watershed Segmentation to De-skull 3D T1 MRI Images

amri_mr_tagging

MATLAB files to investigate the (C)SPAMM sequence

best-readme-template

An awesome README template to jumpstart your projects!

dlup

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

hhg-preprocessing

Preprocessing pipeline for higher harmonic generation images for use with AI

hydra-torchrun-launcher

A Hydra launcher for elastic torchrun

ice

All things ice.

kaobook

A LaTeX class for books, reports or theses based on https://github.com/kenohori/thesis and https://github.com/Tufte-LaTeX/tufte-latex.

lightly

A python library for self-supervised learning on images.

mscthesis

MSc Biophysics thesis on applying deep learning on HHG images for regression and pathology

n2v

This is the implementation of Noise2Void training.

operation-inherent-resolve

Analysis on Dutch airstrikes during Operation Inherent Resolve

pathology-whole-slide-data

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

plotneuralnet

Latex code for making neural networks diagrams

prg

Software to create Precision-Recall-Gain curves and calculate area under the curve

pyimagequalityranking

A Python library for easily calculating image-quality related features from images

sclicom

Self-supervised pretraining with CLInical COntext Multi-instance learning

shit-happens

Create your own Shit Happens playing cards!

siemdejong.github.io

skinstression

Perform skin stress-strain curve regression on SHG images using deep learning

slurmjob

Package for starting slurm interactive sessions via your local CLI.