Name: Sidhant Chopra
Type: User
Company: Yale University
Bio: Neuroscientist and psychologist interested in psychosis, neuroimaging, networks and better treatments.
Twitter: sidchop
Location: New Haven, CT, USA & Melbourne, Australia
Blog: https://scholar.google.com.au/citations?hl=en&user=UAAAD0kAAAAJ&view_op=list_works&sortby=pubdate
Sidhant Chopra's Projects
Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D
Fast and easy visualization of fMRI data quality using carpet plots.
A accessible automated pipeline for resting-state fMRI quality control.
My CV
Diffuse Cluster Estimation and Regression. A de-noising tool.
Plotting tool for brain atlases, in ggplot
ggseg3d R package for cisualising brain atlases through plotly
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Readthedoc documentation below
Data quality control report for the Dynamic Causal Modelling study using the for the Neural Adaptations in the PostPartum Year (Nappy) study.
Code and data for STAGES network deformation models paper.
An interactive graphing library for R
Reproducible and Programmatic Human Neuroimaging Visualisations
agent-based S-I-R model for neurodegeneration
Code for paper: Functional Connectivity in Antipsychotic-Treated and Antipsychotic-Naive Patients With First-Episode Psychosis and Low Risk of Self-harm or Aggression
Surface Preprocessing Pipeline for human fMRI (cocoanlab)
TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
Post-HCP processing code for the Transdiagnostic Connectome Project (TCP) dataset release, 2024
Some r code to visualise what nuisance regressors (global signal, FD, DiCER etc) look like spatially.
Yahoo! Finance market data downloader (+faster Pandas Datareader)