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18s191

Course 18.S191 at MIT, fall 2020 - Introduction to computational thinking with Julia:

brian2modelfitting

Model fitting toolbox for the Brian 2 simulator

corr-spec

simulation of 2D diffusion on a grid to understand fluorescence correlation spectroscopy (FCS)

finch-pack

PCB to record and amplify respiratory pressure in adult zebra finches

fly2p

small package with utility functions for analyzing (fly) calcium imaging data

future-of-foraging-seminars.github.io

hmms

decoding, evaluating and learning HMMs from a bioinformatics perspective

hop-scotch

analysis of grasshopper escape response

image-annals

scripts written for an image-analysis course

impact-fac

estimating the "impact" of JEB for 2018

jam-avoid

visualisation of the jamming avoidance response in weakly electric fish

janelia-unity-toolkit

Packages for the Unity game engine, emphasizing animal studies in VR.

mass-spec

Modelling Ion Traps and Mass Analyzers

mathbio_models

Repository of numerical implementations of mathematical models that I found and thought were pretty cool.

modeller

Comparative homology modelling of SARSCov2 NSP4 subregion using Modeller

nma-course-content

Summer course content for Neuromatch Academy

optimal-forager

numerical description of optimal foraging

pandem-onion

visualising SIRS model of epidemic spread

prinia-project

methods to analyse multi-species bioacoustic datasets

rad-gyres

calculating radii of gyration of proteins from .pdb files

recombinator

model of meiotic recombination

route-nav

Network Model of Route Navigation in Cataglyphis

seq-al

aligning DNA and protein sequences using dynamic programming

songburst

Package to construct network models of songbird nucleus HVC

stokes-flow

Fluid Dynamics Simulations in the Low Reynolds Number Regime

traja

Python tools for 2D spatial trajectory data

tureactor

models of 2D reaction-diffusion systems

unityvr

Tools for analyzing data collected with a custom unity-based VR for insects.

vrstim

Generation and analysis of visual stimuli used in fly virtual reality