Comments (1)
Khush876,
It is PAF format for minimap2 output, the "-t“ parameter set to "-t mm", if it is sam format for blasr output, the ”-t“ parameter set to "-t sam"
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Related Issues (20)
- Contig used more than once ? HOT 3
- Output and parameters HOT 5
- agis.ps.file.MMReader and PathBuilder ? errors HOT 2
- Reading gzipped PAFs HOT 1
- More duplication ? HOT 2
- nodePaths.info could not be created LRScaf-1.1.10 HOT 2
- agis.ps.file.M4Reader error and PathBuilder error HOT 1
- Can lrscaf accept 'scaffolds' as input instead of 'contigs'? HOT 1
- error while running LRscaff HOT 1
- Parameters for contiguous assemblies HOT 2
- Inability to parse iqrt parameter HOT 2
- Null alignment file HOT 1
- duplicated contigs in scaffolds in human assembly. assembly size goes up to 3.24Gbp from 2.85Gbp HOT 2
- Nanopore alignment with PACBIO HOT 1
- Is <tips_length> a wrong parameter name HOT 1
- might be inconsistent log messages? HOT 1
- about gaps HOT 1
- lrscaf throws an error with ont mapped reads from minimap2 HOT 3
- Can the -m4 format generated by BLASR be replaced by the sam format generated by BWA?
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