Comments (10)
Thanks for the feedback.
The first Gtk warning is possibly a clash with another Gtk app using a more
recent
version of the file history (the Gimp is one example). This does not affect the
Biodiverse program itself.
The second issue is due to the input file containing a non-numeric or null
value in a
group column (the "[BASEDATA] Non-numeric cell size field 7, check your data or
cellsize arguments" warning).
The system has been modified to optionally ignore these in the next release
(version
0.11), or alternately it will print a warning in a popup window so it is easier
to
see the error. See Issue #26
Until version 0.11 is released the solution is to delete records with
non-numeric or
null group columns.
Closing the progress dialogue will stop the import in other cases.
Original comment by shawnlaffan
on 2 Nov 2009 at 8:02
- Changed state: Started
- Added labels: ****
- Removed labels: ****
from biodiverse.
Neither of those were the problem. I simply changed all spaces to commas and let
Biodiverse guess the separator and quote character. That DID load the file.
There
were no NULL data and no non-numerics in the file.
Original comment by [email protected]
on 2 Nov 2009 at 7:17
- Added labels: ****
- Removed labels: ****
from biodiverse.
I got some result, but I wanted to analyze more of the data (mostly on -1,1,
except
for an angle). Cell size 0.6, 8 groups, one label. Crashed in clustering.
Original comment by [email protected]
on 2 Nov 2009 at 9:28
- Added labels: ****
- Removed labels: ****
Attachments:
from biodiverse.
Explanation of why the space-delimited version failed (probably). In two places
I had
(intentionally for a different use) put in a pair of spaces.
Original comment by [email protected]
on 2 Nov 2009 at 11:10
- Added labels: ****
- Removed labels: ****
from biodiverse.
Pairs of spaces would cause a problem if they were the delimiter. It would
result in
a null value between the two spaces for one of the columns.
Please let me know which columns you are using for the groups and labels so I
can
reproduce the cluster error.
Original comment by shawnlaffan
on 3 Nov 2009 at 10:35
- Added labels: ****
- Removed labels: ****
from biodiverse.
The first two columns were used as labels. All 8 of the floating point values
were
used as groups (ang,dist,x,y,z,basex,basey,basez or whatever I called them). The
strange thing was that Vista did not even notify that there was a crash. I just
noticed that the window wasn't there any more.
Original comment by [email protected]
on 3 Nov 2009 at 12:26
- Added labels: ****
- Removed labels: ****
from biodiverse.
Just tested the data set using version 0.11 and it clusters with no problems
(sp_select_all() was the spatial condition). It does take a while, though, as
the
matrix is very large (~1.4*10^6 values). It also runs very close to the memory
limits on WinXP (2GB), and exceeds them when two cluster analyses are run and
then
the project is saved. This causes a failure and a crash we cannot trap.
Many of the silent error issues have been rectified through issue #29.
Original comment by shawnlaffan
on 4 Nov 2009 at 4:50
- Added labels: ****
- Removed labels: ****
from biodiverse.
update label and owner
Original comment by shawnlaffan
on 4 Nov 2009 at 7:05
- Added labels: release0.11
- Removed labels: ****
from biodiverse.
version 0.11 released so issue marked as fixed.
Original comment by shawnlaffan
on 6 Nov 2009 at 2:19
- Changed state: Fixed
- Added labels: ****
- Removed labels: ****
from biodiverse.
Original comment by shawnlaffan
on 16 Nov 2009 at 5:31
- Added labels: Milestone-Release0.11
- Removed labels: ****
from biodiverse.
Related Issues (20)
- GUI: spreadsheet imports ignore selected sheet
- Spreadsheet imports: Add Excel::ValueReader::XLSX backend
- Basedata: use GetFeatureCount in shapefile imports
- GUI does not start under macOS Sonoma HOT 6
- Feature request: Table of diversity indices with index properties HOT 4
- CANAPE: Add super category HOT 3
- GUI: plot polygon overlays with fill colour
- Indices: ensure trees have non-negative branch lengths
- Issues - convert hierarchical labels to lists
- GUI visualisation tabs - add option to export current tree HOT 1
- GUI analysis tabs: move the tree plot controls to the side menu HOT 1
- GUI - plot tree using depth across all tab types HOT 1
- GUI Export interface disables keyboard shortcuts when cancelled HOT 1
- GUI spatial tab - add all project trees to the tree chooser HOT 1
- GUI tree plotting - add options for range weighted and equal branch length HOT 1
- calc_abc: don't change the element lists to hashes
- Cluster calcs per node: clear any previous results before re-running
- Cluster tie breaker calculations - set pairwise mode HOT 1
- GUI: unable to change basedata cellsize when origin is non-zero HOT 1
- Clustering progress: change numeric format for most similar value
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