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anchorwave

sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

barn

local data repository

cactus

Official home of genome aligner based upon notion of Cactus graphs

cellid

Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.

coldstress

coursera-ml-andrewng-notes

吴恩达老师的机器学习课程个人笔记

deep_learning_for_biologists_with_keras

tutorials made for biologists to learn deep learning

deeplearning-500-questions

深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系[email protected] 版权所有，违权必究 Tan 2018.06

deeplearning-biology

A list of deep learning implementations in biology

deepplantphenomics

Deep learning for plant phenotyping.

demo

demos

dp_gp_cluster

epidataprocessing

extractors-multispectral

Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.

fcurve

find_cns

find conserved non-coding sequences (CNS)

galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

genomefeature

goatools

Python scripts to find enrichment of GO terms

gpwas

Genome-Phenome Wide Association Study

grass-kaks

KaKs calculation per gene in multiple grass species

grokking-deep-learning

this repository accompanies the book "Grokking Deep Learning"

gsforge

A gene (feature) selection toolset for gene expression matrix (GEM) data.

gviz

This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

homosapiens

hybrid-decay

hybrid-maize-hichip

hyperspectralanalysisintroduction

Brief Introduction to Hyperspectral Image Analysis - Jupyter Notebook

hypprocessing