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arvados-tools

Small tools for working with arvados

beiwe-android

Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe Android app code. The Beiwe2 app is also available on the Google Play store to use with open source builds of the Beiwe backend.

beiwe-ios

Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe iOS app code. The Beiwe2 app is also available on the Apple app store to use with open source builds of the Beiwe backend.

find-ts-project

Find Transition States using measured Kinetic Isotope Effects

hgvm-lighting-graph

Graph representation of Lightning for the HGVM Pilot

matplotlib-venn

Area-weighted venn-diagrams for Python/matplotlib

onlinebrainintensive

Git Repo for my work in the Online Brain Intensive Class

osl-dynamics

Models for inferring dynamics in neuroimaging data.

perl-pipeline

predicting-depression

Project to download neuroimaging data (fMRI, sMRI, and DTI), run the MRI data through NiPype, build regressors on these MRI data to predict depressive behaviors, and predict depressive behaviors from simply MRI data.

server

A reference implementation of the APIs defined in the schemas repository.

sguthrie.gihub.io

Personal Site

terra-coding-interview

tiling-classifier

tiling-pca

tps-thesis

Analyze TPS. Possibly will find transition state ensemble and analyze reaction coordinates from it

umb-and-tps-thesis

Analyze umbrella sampling and transition path sampling data. Used MDAnalysis. Will require modifications to MDAnalysis.analyze.hbonds.py code

vaccine-download

Pull information from MA government website and format