libboost_mpi cannot be found during ./waf check about sferes2 HOT 2 CLOSED

Is your LD_LIBRARY_PATH set properly ?

Le sam. 13 août 2016 04:58, Xin Li [email protected] a écrit :

Hi I have successfully configured with ./waf configure with following
message:

WARNING simplejson not found some function may not work
module : [modules/nn2]
module : [modules/map_elite]
Check for program g++ or c++ : /bin/g++
Check for program cpp : /bin/cpp
Check for program ar : /bin/ar
Check for program ranlib : /bin/ranlib
Checking for g++ : ok
boost headers : Version 1_59 (/scratch/include)
library boost_serialization : ok
library boost_filesystem : ok
library boost_system : ok
library boost_unit_test_framework : ok
library boost_program_options : ok
library boost_graph : ok
library boost_mpi : ok
library boost_python : ok
library boost_thread : ok
Checking for header tbb/parallel_for.h : ok /usr/include
Checking for library libtbb : not found
Checking for header tbb/parallel_for.h : ok /usr/include
Checking for library libtbb : not found
Checking for header mpi.h : ok /scratch2/tmp_xin/foolingPath/openmpi-1.10.2//build/include/
Checking for SDL (optional) : ok
Checking for header Eigen/Core : ok /scratch/eigen
Check for program ode-config : not found
Checking for ODE (optional) : not found
Checking for GSL (optional) : ok

--- configuration ---
compiler:

• CXX: gcc
  boost version: 1_59
  mpi: True
  Compilation flags :
• default:
  CXXFLAGS : -D_REENTRANT -Wall -fPIC -ftemplate-depth-1024 -Wno-sign-compare -Wno-deprecated -Wno-unused -DUSE_SDL -I/scratch/protoc-2.6.1/include -DMPI_ENABLED -DNO_PARALLEL -DEIGEN3_ENABLED -DSFERES_ROOT="/scratch2/fuxin/fooling/sferes" -DNDEBUG -O3 -ffast-math
  LINKFLAGS: -L/usr/local/apps/cuda/current/lib64 -L/scratch/protoc-2.6.1/lib -L/scratch2/fuxin/fooling/sferes/lib
• debug:
  CXXFLAGS : -D_REENTRANT -Wall -fPIC -ftemplate-depth-1024 -Wno-sign-compare -Wno-deprecated -Wno-unused -DUSE_SDL -I/scratch/protoc-2.6.1/include -DMPI_ENABLED -DNO_PARALLEL -DEIGEN3_ENABLED -DSFERES_ROOT="/scratch2/fuxin/fooling/sferes" -O1 -ggdb3 -DDBG_ENABLED
  LINKFLAGS: -L/usr/local/apps/cuda/current/lib64 -L/scratch/protoc-2.6.1/lib -L/scratch2/fuxin/fooling/sferes/lib

--- license ---
Sferes2 is distributed under the CECILL license (GPL-compatible)
Please check the accompagnying COPYING file or http://www.cecill.info/
'configure' finished successfully (0.286s)

and was build successfully.

But when I use ./waf check, i get a lot of fail:

WARNING simplejson not found some function may not work
module : [modules/nn2]
module : [modules/map_elite]
Waf: Entering directory /scratch2/fuxin/fooling/sferes/build' Entering directory/scratch2/fuxin/fooling/sferes'
Entering directory /scratch2/fuxin/fooling/sferes/modules/' Entering directory/scratch2/fuxin/fooling/sferes/modules/'
Waf: Leaving directory `/scratch2/fuxin/fooling/sferes/build'
'build' finished successfully (0.072s)
Running the unit tests
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_ea_cmaes: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_ea_dom_sort: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_ea_eps_moea: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_ea_nsga2: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_ea_rank_simple: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_eval_mpi: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_eval_parallel: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_gen_bit_string: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_gen_cmaes: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_gen_evo_float: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_gen_sampled: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/tests/tests_modif_diversity: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
Running 3 test cases...
Entering test module "nn"
../modules/nn2/test_nn.cpp(48): Entering test case "nn_basic"
../modules/nn2/test_nn.cpp(48): Leaving test case "nn_basic"; testing time: 10ms
../modules/nn2/test_nn.cpp(84): Entering test case "nn_remove_small_weights"
2
../modules/nn2/test_nn.cpp(84): Leaving test case "nn_remove_small_weights"; testing time: 10ms
../modules/nn2/test_nn.cpp(104): Entering test case "nn_speed"
timer (1000 iterations):0.59
Test case nn_speed did not check any assertions
../modules/nn2/test_nn.cpp(104): Leaving test case "nn_speed"; testing time: 1500ms
Leaving test module "nn"; testing time: 1520ms

*** No errors detected
/scratch2/fuxin/fooling/sferes/build/default/modules/nn2/test_dnn: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/modules/nn2/test_mlp: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/modules/nn2/test_hyper_nn: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/modules/nn2/test_dnn_ff: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/modules/nn2/test_osc: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/modules/nn2/test_hyper_nn_anh: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/default/modules/map_elite/test_map_elite: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_ea_cmaes: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_ea_dom_sort: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_ea_eps_moea: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_ea_nsga2: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_ea_rank_simple: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_eval_mpi: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_eval_parallel: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_gen_bit_string: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_gen_cmaes: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_gen_evo_float: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_gen_sampled: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/tests/tests_modif_diversity: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
Running 3 test cases...
Entering test module "nn"
../modules/nn2/test_nn.cpp(48): Entering test case "nn_basic"
../modules/nn2/test_nn.cpp(48): Leaving test case "nn_basic"; testing time: 10ms
../modules/nn2/test_nn.cpp(84): Entering test case "nn_remove_small_weights"
2
../modules/nn2/test_nn.cpp(84): Leaving test case "nn_remove_small_weights"
../modules/nn2/test_nn.cpp(104): Entering test case "nn_speed"
timer (1000 iterations):0.55
Test case nn_speed did not check any assertions
../modules/nn2/test_nn.cpp(104): Leaving test case "nn_speed"; testing time: 1600ms
Leaving test module "nn"; testing time: 1610ms

*** No errors detected
/scratch2/fuxin/fooling/sferes/build/debug/modules/nn2/test_dnn: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/modules/nn2/test_mlp: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/modules/nn2/test_hyper_nn: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/modules/nn2/test_dnn_ff: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/modules/nn2/test_osc: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/modules/nn2/test_hyper_nn_anh: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
/scratch2/fuxin/fooling/sferes/build/debug/modules/map_elite/test_map_elite: error while loading shared libraries: libboost_mpi.so.1.59.0: cannot open shared object file: No such file or directory
default/tests/tests_ea_cmaes ...............FAILED
default/tests/tests_ea_dom_sort ............FAILED
default/tests/tests_ea_eps_moea ............FAILED
default/tests/tests_ea_nsga2 ...............FAILED
default/tests/tests_ea_rank_simple .........FAILED
default/tests/tests_eval_mpi ...............FAILED
default/tests/tests_eval_parallel ..........FAILED
default/tests/tests_gen_bit_string .........FAILED
default/tests/tests_gen_cmaes ..............FAILED
default/tests/tests_gen_evo_float ..........FAILED
default/tests/tests_gen_sampled ............FAILED
default/tests/tests_modif_diversity ........FAILED
default/modules/nn2/test_nn ....................OK
default/modules/nn2/test_dnn ...............FAILED
default/modules/nn2/test_mlp ...............FAILED
default/modules/nn2/test_hyper_nn ..........FAILED
default/modules/nn2/test_dnn_ff ............FAILED
default/modules/nn2/test_osc ...............FAILED
default/modules/nn2/test_hyper_nn_anh ......FAILED
default/modules/map_elite/test_map_elite ...FAILED
debug/tests/tests_ea_cmaes .................FAILED
debug/tests/tests_ea_dom_sort ..............FAILED
debug/tests/tests_ea_eps_moea ..............FAILED
debug/tests/tests_ea_nsga2 .................FAILED
debug/tests/tests_ea_rank_simple ...........FAILED
debug/tests/tests_eval_mpi .................FAILED
debug/tests/tests_eval_parallel ............FAILED
debug/tests/tests_gen_bit_string ...........FAILED
debug/tests/tests_gen_cmaes ................FAILED
debug/tests/tests_gen_evo_float ............FAILED
debug/tests/tests_gen_sampled ..............FAILED
debug/tests/tests_modif_diversity ..........FAILED
debug/modules/nn2/test_nn ......................OK
debug/modules/nn2/test_dnn .................FAILED
debug/modules/nn2/test_mlp .................FAILED
debug/modules/nn2/test_hyper_nn ............FAILED
debug/modules/nn2/test_dnn_ff ..............FAILED
debug/modules/nn2/test_osc .................FAILED
debug/modules/nn2/test_hyper_nn_anh ........FAILED
debug/modules/map_elite/test_map_elite .....FAILED

Successful tests: 2 (5.0%)
Failed tests: 38 (95.0%)
Erroneous tests: 0 (0.0%)

Total number of tests: 40

Unit tests finished
'check' finished successfully (3.346s)

—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub
#42, or mute the thread
https://github.com/notifications/unsubscribe-auth/AFu8v2YquoS24duRgrWXiXyGSXsa_35mks5qfTKugaJpZM4Jjlye
.

from sferes2.

closed because no news.

from sferes2.