seung1yoo Goto Github PK

affypipetbi

Genotype Caller From Axiom CEL files

agilent_cgp_check

Check the contents of Agilent SureSelect Cancer CGP

atgcu-util

cnvkit_pipeline

#cnv_analysis #cnvkit #snakemake

de_novo_mutation_calling_pipeline

de novo mutation calling pipeline

demux2ready

fpdf2

Simple PDF generation for Python

getmappedrawreads

This is a pipeline written in snakemake. This pipeline checks the mapped read in the bam file as proper pair. And then, extracts mapped reads from the original raw read fastq file that has not been preprocessed(adapter trim, quality trim, etc...).

kdna_qc_pipeline

mine

Methylation (Whole Genome Bisulfite Sequencing) analysis pipelINE

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nssp

Non-human Species Smallrna-seq Pipeline

pcr_product_anl

phyne

pipeline_cookiecutter

a template for pipelining

poc-reportlab

primerprobe

"PrimerProbe: Microbiome Primer Identification Tool"

reportlabbookcode

Code examples for the book, ReportLab: PDF Processing with Python

rescale-pipeline

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

screenrc

Repository for my .screenrc files

snakemake-aws-parallelcluster-slurm

Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler

snakemake-s3-prototype

wes-pipeline

Pipeline for Whole Exome Sequencing data

yoosmodules

my python modules

yoosscripts