Levenshtein distance about seq HOT 5 CLOSED

Hi @arshaji @markhend, thanks for the quick reply. It did not occur to me that one can set a penalty for gap extension sans a penalty for gap opening. But it works.

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Hi @markhend, yes, the (non-) issue was resolved. a=0, b=1, gapo=0, gape=1 was exactly what I was looking for. Thanks.

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Hi @rutlang, are you passing gape=1 as well? e.g.

from bio import *
q = s'AAACCCGGGTTT'
t = s'TAACCCAGGGTTTAAA'
print q @ t  # score = -5
print q.align(t, a=0, b=1, gapo=0, gape=1, score_only=True)  # score = -5

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I messed with this a bit and got it to seemingly work with a=0, b=1, gapo=0, gape=1

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Hi @rutlang. Would it be OK if we closed this issue?

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