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Matt Boyd's Projects

aws-emr-course-bootstrap icon aws-emr-course-bootstrap

A sample template and script for bootstrapping an EMR cluster for student/coursework, including an Nginx reverse proxy with basic auth for Livy. Tested in AWS Academy accounts.

aws-saml-proxy icon aws-saml-proxy

Templates to deploy a SAML Proxy based on SATOSA that runs on Fargate and enables the ability proxy SAML requests. Configuration built to support AWS sign-in but can be modified.

aws-transcript icon aws-transcript

Python script that can process Amazon Transcribe JSON documents and generate CSV, TSV, and HTML files as output.

cfn-saml-idp icon cfn-saml-idp

An CloudFormation template that uses a CustomResource to create a SAML IdP and IAM Roles for federation.

duplicity-glacier-guide icon duplicity-glacier-guide

Descibes how to use a containerized version of Duplicity to backup files to S3 Glacier. Especially useful for backups containing many small files and where incremental backups are desired.

glue-csv-to-mysql icon glue-csv-to-mysql

This package creates a Glue Python Shell Job that will load data from a CSV file in S3 to a MySQL database server for ELT workflows. The script itself can also be run standalone outside of Glue.

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

satosa icon satosa

Proxy translating between different authentication protocols (SAML2, OpenID Connect and OAuth2)

sftp-lambda icon sftp-lambda

A simple SAM application that creates a Lambda function used to download a file from an SFTP server and copy it to S3. Triggered by CloudWatch scheduled event.

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