selecton98 Goto Github PK

barcode_issue_10x

carlin_public

circrna_4dglab2

circRNA upstream for 4DGlab2

circrna_icc

Data and codes for this article: Wang X, Wang G, Wu Z, Dong Y, Shi Y, Yang F, Chen X, Wang J, Du S, Xu H, Zheng Y. Exosomal circ-PTPN22 and circ-ADAMTS6 mark T cell exhaustion and neutrophil extracellular traps in Asian intrahepatic cholangiocarcinoma. Mol Ther Nucleic Acids. 2022 Dec 23;31:151-163. doi: 10.1016/j.omtn.2022.12.012. PMID: 36700045;

circrna_pan-cancer

Data and codes for this article: Wang X, Dong Y, Wu Z, Wang G, Shi Y, Zheng Y. Machine Learning-Based Comparative Analysis of Pan-Cancer and Pan-Normal Tissues Identifies Pan-Cancer Tissue-Enriched circRNAs Related to Cancer Mutations as Potential Exosomal Biomarkers. Front Oncol. 2021 Sep 15;11:703461. doi: 10.3389/fonc.2021.703461. PMID: 34604037

dandelion

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data

hic_4dglab2

HiC upstream for 4DGlab2

others_4dglab2

ATACseq, DEXseq, STAR-Fusion

pertpy-tutorials

share-seq-alignmentv2

Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2

singlecell_palmgus

Data and codes for this presentation: Wang, X.1 2 3,*; Han, H.1 3; Sun, J.3 4; Wang, Q.2; Gao, X.-M.1 3; Shen, K.-N.1 3; Zhang, L.1 3; Zhao, Y.2; Cao, X.-X.1 3; Qian, M.5; Chen, Y.2; Li, J.1 3. S172: FUNCTIONAL SUBSETS OF PLASMA CELLS ASSOCIATED WITH AMYLOID PRODUCTION AND VENETOCLAX SENSITIVITY. HemaSphere 6():p 73-74, June 2022

single_cell_ball_mrd

Codes for Paper 'Elucidating Minimal Residual Disease of Pediatric B cell Acute Lymphoblastic Leukemia by Single Cell Analysis'.

snakemake_darlin

survey_medstud

Data and codes for this article: Zhao J, Li Y, Wang X, Wang Z, Yu S, Li T. Assessment of knowledge, attitude, and practice of sexual health among students in a Chinese medical college: a cross-sectional study. Sex Med. 2023 May 22;11(2):qfad015. doi: 10.1093/sexmed/qfad015. PMID: 37228768; PMCID: PMC10204649.

tgs_pcds

Data and codes for this article. Title: Clonal Hematopoietic Mutations in Plasma Cells Define Subgroups of Plasma Cell Disorders. Authors: Xuezhu Wang1†, Liping Zuo 2,†, Yanying Yu1,†, Xinyi Xiong1, Jian Xu2, Bing Qiao 2, Jia Chen1, Hao Cai1, Hongxiao Han1, Xin-xin Cao1, Jun Deng2, Chunyan Sun2*, and Jian Li1*. Status: Under review.