seb-mueller Goto Github PK
Name: Sebastian
Type: User
Company: Alva Genomics
Bio: Founder of Alva Genomics (bioinformatics consultancy)
Blog: alva-genomics.com
Sebastian's Projects
arabidopsis_smallrna_loci
Additional material for small RNA loci project
bioconda-recipes
Conda recipes for the bioconda channel.
blog
technical blog based using github pages
chip-seq_anidulans
Code for analysis of Aspergillus nidulans H3, H3K9ac and K3K14ac ChIP-Seq libraries
chlamy_locus_map
Small RNA Locus Map for Chlamydomonas reinhardtii
dropseqpipe
A SingleCell RNASeq pre-processing pipeline built on snakemake
fastfold
Speed up Vim by updating folds only when called-for.
fzf.vim
fzf :heart: vim
jumptoverticaloccurrence
Like f{char}, but searching the same screen column, not line.
kwbdi.vim
Keep Window on Buffer Delete - Improved
memes
An R interface to the MEME Suite
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
netlify-source
Hugo sources for netlify deployment
nvim-send-to-term
Neovim plugin for REPL integration
pooling-nextseq-fastq
Pooling Illumina NextSeq 500 fastq files
protr
🧬 Toolkit for generating various numerical features of protein sequences
python-basic
Python3 teaching materials for basic introduction to Python (2 days)
r-code-misc-seb
Miscellaneous R functions and code chunks
roc
protocols
sceasy
A package to help convert different single-cell data formats to each other
scripts_tribe
Interspecific hybridization in tomato influences endogenous viral sRNAs and alters gene expression
scrna.seq.course
Analysis of single cell RNA-seq data course
seurat.utils
Various utility functions for Seurat single-cell analysis
simulate-rnaseq-reads
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
singularity_dropseqpipe
Singularity container for dropSeqPipe
singularity_srna_phasing
sRNA phasing software singularity container
small-rna_swr1
Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
snakemake_srnaseq
Snakemake workflow for processing small RNA-seq libaries
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