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10-steps-to-become-a-data-scientist

📢 Ready to learn! you will learn 10 skills as data scientist:📚 Machine Learning, Deep Learning, Data Cleaning, EDA, Learn Python, Learn python packages such as Numpy, Pandas, Seaborn, Matplotlib, Plotly, Tensorfolw, Theano...., Linear Algebra, Big Data, Analysis Tools and solve some real problems such as predict house prices.

alienindexr

an R package to calculate Alien Index (AI) for genes in target species based on homolog search.

bic-variants_pipeline

BIC@MSKCC Variants Pipeline

blacklist

Application for making ENCODE Blacklists

chromosight

Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.

coursera-machine-learning-stanford

Machine learning-Stanford University

deplink

Compares the genetic/epigenetic features between cancer cell lines with different dependencies of a gene set (signature)

epiteome

Simultaneous Detection of Transposable Element Insertion Sites and their DNA Methylation Levels from Plant Genomes

evannus

Perl scripts used in Euplotes vannus genomic data analysis

fithic

Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

fscanr

Identifies Programmed Ribosomal Frameshifting (PRF) events from mRNA/cDNA BLASTX output

genet

A tool to explore large network of genes, generated based on the co-occurence of the genes across several strains

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

gpsit

Guided Phylogenetic Search in tree (GPSit) is a simple and unsupervised method to do phylogenomic reconstruction.

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

k27me_simulation

Simulating the distribution of K27 methylation marks

l1em

Estimate locus specific human LINE-1 expression.

learnr

mageckflute

methyldackel

A (mostly) universal methylation extractor for BS-seq experiments.

nichenetr

NicheNet: predict active ligand-target links between interacting cells

nongenicdomains

Creating domains of broad histone marks in nonGenic regions

octave

my octave exercises for 2011 stanford machine learning class, posted after the due date of course

rblast

Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

seanchen607.github.io

My GitHub Pages

shared_broad_domain_calling

Three scripts used for calling broad histone mark domains

sniper

stop_codon_usage