Comments (8)
In GitLab by @grst on Mar 19, 2020, 09:24
changed the description
from scirpy.
In GitLab by @grst on Mar 20, 2020, 18:14
changed the description
from scirpy.
In GitLab by @szabogtamas on Mar 26, 2020, 10:36
If we want to make some of the datasets available online, https://cyverse.org/data-store might be an option. Especially, if the datasets are too big for GitHub.
from scirpy.
In GitLab by @grst on Mar 26, 2020, 10:40
That's interesting... who's financing that?
There's a hack to attach files up to 2GB to github-releases, which I would have gone for...
But this might be a good alternative.
from scirpy.
In GitLab by @szabogtamas on Mar 26, 2020, 10:51
I don't know much about this background. The reason I have used it so far is that it can host data for custom tracks in UCSC genome browser
from scirpy.
In GitLab by @grst on Apr 6, 2020, 19:49
started downloading fastq files of the smartseq2 data... at some point we can run them though sandro's pipeline.
from scirpy.
In GitLab by @grst on Apr 8, 2020, 15:01
assigned to @grst
from scirpy.
Closed in favor of #198.
We will have a nice BCR Smart-seq2 dataset, I don't think there is an urgent reason to add more.
from scirpy.
Related Issues (20)
- tl.define_clonotypes within_group parameter returns ValueError HOT 1
- Integrate TCRdist3 HOT 5
- Retrieving specific portions of the Immune Receptor beyond the junction (or CDR3). HOT 2
- ir_dist alignment stuck HOT 4
- IEDB database cdr3_aa stored as junction_aa HOT 10
- Unclear default value for the Hamming Distance cut-off HOT 1
- Dandelion interoperability
- Where has UMI count for AIR chains gone? HOT 1
- Large dataset tutorial HOT 1
- Make sure axes of nextwork plots don't have any ticks
- Add the Morisita-Horn index for repertoire overlap similarity scores HOT 1
- Sorting logic in `index_chains()` HOT 3
- Community tutorial page
- ir.tl.ir_query fails with error 'ValueError: max_workers must be greater than 0' HOT 1
- ir.tl.clonotype_modularity - ValueError: Length of values does not match length of index HOT 2
- "read_10x_vdj" not loading data properly HOT 2
- clone definition purely using CDR3 sequence HOT 1
- Optimize TCRdist metric HOT 1
- When running 'ir.tl.define_clonotypes' on MacOS14.4.1, I've got an Error:module 'os' has no attribute 'sched_getaffinity' HOT 2
- TypeError: join() got an unexpected keyword argument 'validate' HOT 9
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from scirpy.