Comments (3)
Link above is broken
from scanpy.
fixed, thanks. seems like Bioconductor has turned off the mirror, but put their packages in a github organization
from scanpy.
Well, I guess the solutions via .loom
and .h5ad
are things that people started liking... both are investigated within the Human Cell Atlas and there will be a consensus solution at some point... No need to discuss this here anymore...
from scanpy.
Related Issues (20)
- Switch away from asv HOT 1
- Access to Diffusion Map methods (and other embedding methods) as Scikit-Learn style API HOT 2
- Wrongly ordered DotPlot totals in `scanpy` 1.10.1 with Pandas 1.x HOT 3
- sc.get.aggregate summary statistics HOT 2
- Broken Scrublet Test
- Error in running scrublet HOT 1
- error in readwrite.py HOT 1
- Adata.raw gets modified upon log normalization of adata HOT 8
- AttributeError: 'Ingest' object has no attribute '_pca_use_hvg'
- Only show the genes that have significant statistics HOT 2
- I have always had a question: do I need to scale my adata before running sc.tl.score_genes? HOT 1
- Dotplot / Matrixplot Bug/Suggestion [Key Error] Because "var_group_labels" & "categories_order" using the same variable (memory), mostly happened when "swap_axes=True" HOT 1
- Pre-release jobs fail because scipy removed `.A` from csr/csc matrices
- OSError between tissue_positions_list.csv and tissue_positions.csv HOT 1
- unexpected error in sc.pl.dpt_timeseries and dpt_groups_pseudotime HOT 2
- Broken zappy tests
- scanpy legacy and not legacy about scale HOT 2
- scanpy.pl.spatial plotting square pixels HOT 1
- Scatterplot with color for categorical value outputs attribute error about legend HOT 6
- highly_variable_genes with batch_key results in a "division by zero" error, if there is a batch with a single sample HOT 1
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from scanpy.