raw is also normalized with clr about muon HOT 4 CLOSED

import numpy as np
from anndata import AnnData
from muon import prot as pt

adata = AnnData(np.arange(1000).reshape(-1, 10))
adata.raw = adata

pt.pp.clr(adata)
print(adata.X[:2,:2])
# [[0.         0.00276899]
#  [0.02767339 0.03004515]]
print(adata.raw.X[:2,:2])
# [[ 0.  1.]
#  [10. 11.]]

import muon as mu
import anndata
import numpy as np

x = np.array([[10, 10],
              [10, 20]], dtype=float)
adata = anndata.AnnData(x)
adata.raw = adata

mu.prot.pp.clr(adata)
print(adata.X)
# [[0.64662716 0.50558292]
#  [0.64662716 0.83979984]]
print(adata.raw.X)
# [[0.64662716 0.50558292]
# [0.64662716 0.83979984]]

print(mu.__version__) # 0.1.5
print(anndata.__version__) # 0.9.2
print(sc.__version__) # 1.9.3

x = np.array([[10, 10],
              [10, 20]], dtype=float)
adata = anndata.AnnData(x)
adata.raw = adata

adata = mu.prot.pp.clr(adata, inplace=False)
print(adata.X)
# [[0.64662716 0.50558292]
# [0.64662716 0.83979984]]
print(adata.raw.X)
# [[10. 10.]
# [10. 20.]]

id(adata.raw.X) == id(adata.X)
# => False

id(adata.raw.X) == id(adata.X)
# => True