Related Issues (20)
- Missing hints for capital letters required HOT 1
- Mix SIngle end and Paired end data HOT 2
- Update to VEP 96 HOT 2
- Update GATK TO 4.1.1.0 and include CNN HOT 1
- Target Bed for HaplotypeCaller HOT 13
- Cannnot annotate using CADD HOT 1
- Annotation with both SnpEff and VEP HOT 1
- Coverage 0.0X on whole exome sequencing data HOT 3
- Strange VCFTools graphs in MultiQC report HOT 1
- fq.gz extension HOT 2
- RunVCFTools and RunBcftoolsStats are run twice for the same input HOT 2
- containerOverrides for AWS BATCH nextflow HOT 4
- Error executing process ConcatVCF HOT 8
- Huge problem with pipeline on Happlotype caller HOT 1
- BWA map error HOT 4
- ASCAT loci for download link timeout HOT 2
- No variants IDs annotated HOT 1
- VEP only annotates Tumor samples HOT 5
- Errors running sarek with Nextflow 19.07 - command 'ps' not found HOT 13
- error running the test HOT 4
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