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FDI Laboratory's Projects

antibody-watch icon antibody-watch

Antibody Watch: Text Mining Antibody Specificity from the Literature

api-handbook icon api-handbook

Gitbook with information and documentation of APIs and services provided by FAIR Data Informatics Lab

bio_electra icon bio_electra

Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining

bulkchanger icon bulkchanger

A tool to perform a mass change to a desired element in a desired property in a MediaWiki that implements Semantic MediaWiki and Semantic Forms.

cinergi-prov icon cinergi-prov

Data from CINERGI pipeline and clients to connect to the server

navigator icon navigator

A javascript toolkit to embed data and literature search utilizing the Neuroscience Information Framework REST search services.

oai-pmh-harvester icon oai-pmh-harvester

An OAI-PMH harvester written in PHP to crawl OAI repositories. Includes ability to update and restart prior crawls.

paperpdf2xml icon paperpdf2xml

A set of Python 3 CLI to convert scientific papers in PDF format to XML documents with sections and tables.

quantitative-db icon quantitative-db

A flexible database for storing arbitrary quantitative measurements

rdw icon rdw

Resource Disambiguator Web

scibot icon scibot

curation workflow automation and coordination

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